Repbase Reports
2010, Volume 10, Issue 12
December 31, 2010
Copyright © 2001-2024 - Genetic Information Research Institute, California
ISSN# 1534-830X
Page 2167

Copia-1_TRe-LTR

LTR from putative autonomous Copia family element.

Submitted:
20-Nov-2010 		Accepted:
20-NOV-2010
Key Words:
Copia; LTR Retrotransposon; Transposable Element; reverse transcriptase; retrotransposon; Copia-like; Copia-1_TRe-LTR
Source:
Trifolium repens 		Organism:
Trifolium repens 		Taxonomy:
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
[] Authors:
Laten,H.M., Hand,M.L., Cogan,N.O.I. and Forster,J.W.
Title:
LTR retrotransposons in white clover, Trifolium repens L.
Journal:
Repbase Reports 10(12), 2167-2167 (2010)
Abstract:
5' and 3' LTRs are identical and flanked by 5 bp target site duplications, suggesting recent origin. Unusual 3' ends terminate in TA rather than CA. Genbank Accession GU443966 positions 21803-22069 and 26647-26913.
Derived:
Positions 26647 26913 Accession No GU443966 EMBL/GenBank/DDBJ
Download Sequence - Format:
IG, EMBL, FASTA
References:
  1. Hand,M.L., Cogan,N.O.I., Sawbridge,T.I., Spangenberg,G.C. and Forster,J.W.
    Comparision of homoeolocus organisation in paired BAC clones from white clover (Trifolium repens L.) and microcolinearity with model legume species.
    BMC Plant Biology 10, 94-94 (2010)

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