Repbase Reports |
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| 2010, Volume 10, Issue 9 |
| September 30, 2010 |
| Copyright © 2001-2024 - Genetic Information Research Institute, California |
| ISSN# 1534-830X |
| Page 1214 |
Harbinger2-1_ES |
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A family of autonomous Harbinger transposons - a consensus. |
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Submitted: 13-Aug-2010 |
Accepted: 13-AUG-2010 |
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Key Words: Harbinger; DNA transposon; Transposable Element; Interspersed repeat; Harbinger2; Harbinger2-1_ES |
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Source: Ectocarpus siliculosus |
Organism: Ectocarpus siliculosus |
Taxonomy: Eukaryota; Stramenopiles; PX clade; Phaeophyceae; Ectocarpales; Ectocarpaceae; Ectocarpus |
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Authors: Kapitonov,V.V. and Jurka,J. |
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Title: Harbinger2, a novel clade of Harbinger transposons in protozoan, fungi, choanoflagellate, and metazoans. |
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Journal: Repbase Reports 10(9), 1214-1214 (2010) |
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Abstract: Harbinger2-1_ES belongs to a novel clade, Harbinger2, of Harbinger DNA transposons. This clade includes transposons present in protozoan (brown alga), fungi, choanoflagellate, and metazoans. Harbinger2-1_ES is a consensus sequence of a family of autonomous Harbinger transposons that were active in the red alga genome very recently. The consensus was derived from 3 copies >99% identical to it. The genome contains only two full-size copies of Harbinger2-1_ES; ther are flanked by the unusual TAA target site duplications (the same is for Harbinger2-3_TMe). In addition, the TWA target site duplications are perfectly defined for 8 copies of the non-autonomous Harbinger2-1N1_ES. TIRs are 16 bp long and contain 2 mismatches. HArbinger2-1_ES codes for the 350-aa TPase (3 exons).
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Derived: [1] (Consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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