Repbase Reports
2011, Volume 11, Issue 9
September 30, 2011
Copyright © 2001-2024 - Genetic Information Research Institute, California
ISSN# 1534-830X
Page 2564

Sagan-1_AAn

DNA transposon from Aureococcus anophagefferens - a consensus.

Submitted:
13-May-2011 		Accepted:
13-MAY-2011
Key Words:
Mariner/Tc1; DNA transposon; Transposable Element; Sagan-1_AAn
Source:
Aureococcus anophagefferens 		Organism:
Aureococcus anophagefferens 		Taxonomy:
Eukaryota; Stramenopiles; Pelagophyceae; Pelagomonadales; Aureococcus
[] Authors:
Kojima,K.K. and Jurka,J.
Title:
Sagan, a new group of DNA transposons belonging to the Mariner/Tc1/IS630 superfamily.
Journal:
Repbase Reports 11(9), 2564-2564 (2011)
Abstract:
This consensus is generated from 5 sequences with >97% identity. The 5' end of this consensus corresponds to an insertion site by another transposon, and the 3' end is the end of this transposon flanked by TA dinucleotide. Thus this consensus is likely 5'-truncated. Sagan is a new group of DNA transposons belonging to the Mariner/Tc1/IS630 superfamily. But there is an insertion between D and E in the encoded DDE-transposase.
Derived:
[2] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:
  1. Gobler,C.J., Berry,D.L., Dyhrman,S.T., Wilhelm,S.W., Salamov,A., Lobanov,A.V., Zhang,Y., Collier,J.L. et al.
    Niche of harmful alga Aureococcus anophagefferens revealed through ecogenomics.
    Proc Natl Acad Sci U S A 108(11), 4352-4357 (2011)

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