Repbase Reports |
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| 2013, Volume 13, Issue 1 |
| January 31, 2013 |
| Copyright © 2001-2024 - Genetic Information Research Institute, California |
| ISSN# 1534-830X |
| Page 766 |
NeSL-3_CBre |
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A family of NeSL non-LTR retrotransposons - consensus. |
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Submitted: 22-Mar-2011 |
Accepted: 22-JAN-2013 |
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Key Words: NeSL; Non-LTR Retrotransposon; Transposable Element; NeSL-3_CBre |
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Source: Caenorhabditis brenneri |
Organism: Caenorhabditis brenneri |
Taxonomy: Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis |
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Authors: Kojima,K.K. and Jurka,J. |
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Title: NeSL, a spliced leader RNA gene-specific non-LTR retrotransposon family from nematodes. |
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Journal: Repbase Reports 13(1), 766-766 (2013) |
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Abstract: Several copies of this retrotransposon family are inserted into TE-1_CBre. This consensus is generated from 7 sequences with >97% identity. 5' terminus is uncertain. This sequence was derived from sequence data generated by Genome Sequencing Center at Washington University School of Medicine in St. Louis. The spliced leader exon-specific non-LTR retrotransposon family, NeSL, was reported from Caenorhabditis elegans [1]. Here we report NeSL elements from six other Caenorhabditis species: C. angaria, C. brenneri, C. briggsae, C. japonica, C. remanei and C. sp. 11 MAF-2010. The target sites are the same among the NeSL elements whose termini were determined, with the exception of NeSL-3_CBre, which targets a putative transposon (TE-1_CBre) including a part of spliced leader sequence.
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Derived: [2] (Consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References:
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