Repbase Reports
2013, Volume 13, Issue 12
December 31, 2013
Copyright © 2001-2024 - Genetic Information Research Institute, California
ISSN# 1534-830X
Page 3131

UCON29B_LCh

UCON29-like transposon from Coelacanths.

Submitted:
17-Dec-2013 		Accepted:
17-DEC-2013
Key Words:
Kolobok; DNA transposon; Transposable Element; Nonautonomous; Interspersed repeat; DNA; conserved; UCON29; CNE; UCON29_LCh; UCON29B_LCh
Source:
Latimeria chalumnae 		Organism:
Latimeria chalumnae 		Taxonomy:
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Coelacanthiformes; Coelacanthidae; Latimeria
[] Authors:
Kojima,K.K. and Jurka,J.
Title:
Kolobok-type conserved UCON29 DNA transposon from the coelacanth genome.
Journal:
Repbase Reports 13(12), 3131-3131 (2013)
Abstract:
~78% identical to consensus. TTAA tsd included. The consensus is ~78% identical to that of UCON29_LCh. The termini 5'-AG..CT-3' indicate it is a Kolobok.
Derived:
[4] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:
  1. Amemiya,C.T., Alföldi,J., Lee,A.P., Fan,S., Philippe,H., Maccallum,I., Braasch,I., Manousaki,T., Schneider,I. et al.
    The African coelacanth genome provides insights into tetrapod evolution.
    Nature 496(7445), 311-316 (2013)

  2. Gentles,AJ., Wakefield,MJ., Kohany,O., Gu,W., Batzer,MA., Pollock,DD. and Jurka,J.
    Evolutionary dynamics of transposable elements in the short-tailed opossum Monodelphis domestica.
    Genome Res 17(7), 992-1004 (2007)

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