Repbase Reports
2014, Volume 14, Issue 1
January 31, 2014
Copyright © 2001-2024 - Genetic Information Research Institute, California
ISSN# 1534-830X
Page 24

Kolobok-1_CCri

DNA transposon from the red seaweed: consensus.

Submitted:
07-Jun-2013 		Accepted:
07-JUN-2013
Key Words:
Kolobok; DNA transposon; Transposable Element; Kolobok-1_CCri
Source:
Chondrus crispus 		Organism:
Chondrus crispus 		Taxonomy:
Eukaryota; Rhodophyta; Florideophyceae; Gigartinales; Gigartinaceae; Chondrus
[] Authors:
Kojima,K.K. and Jurka,J.
Title:
DNA transposons from the red seaweed.
Journal:
Repbase Reports 14(1), 24-24 (2014)
Abstract:
~97% identical to consensus. 20bp TIR. TTAA TSD. TSDs, the terminal structure, and the presence of DxxH motif after the second conserved D residue indicate it is a Kolobok. However, the protein sequence is quite distant from any other transposases.
Derived:
[2] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:
  1. Collén,J., Porcel,B., Carré,W., Ball,S.G., Chaparro,C., Tonon,T., Barbeyron,T., Michel,G., Noel,B., Valentin,K. et al.
    Genome structure and metabolic features in the red seaweed Chondrus crispus shed light on evolution of the Archaeplastida.
    Proc Natl Acad Sci U S A 110(13), 5247-5252 (2013)

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