Repbase Reports

2014, Volume 14, Issue 2
February 28, 2014
Copyright © 2001-2024 - Genetic Information Research Institute, California
ISSN# 1534-830X
Page 345

MuDR-1_SIn

MuDR-type transposon sequence - a consensus.

Submitted:
20-Dec-2011
Accepted:
20-DEC-2011
Key Words:
MuDR; DNA transposon; Transposable Element; MuDR-1_SIn
Source:
Solenopsis invicta
Organism:
Solenopsis invicta
Taxonomy:
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita; Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis
[] Authors:
Jurka,J. and Kojima,K.K.
Title:
DNA transposons from the fire ant genome.
Journal:
Repbase Reports 14(2), 345-345 (2014)
Abstract:
~93% identical to consensus. 3' terminus is uncertain. It encodes a Rehavkus-type transposase and a Ulp1 protease. The region 34-979 is an insertion similar to DNA9-1_SIn, and thus masked by x (TSDs are GGATTCCCC and GGTTTCCCT). The sequence 34-979: GTGTGTGTGAAGTTGGTGTATCATTTTAAGGAAATTCACGACAAATTGAGAGTTCTGGCTTTATTTATATTAGTTCTTTATTT ATATTAGTTTCTGATAGATAAAACAAATAGTTCTGGCCTTTAAAGTAAAAAAACGCATAGGATAAAGTGAGACGTCAGGTTC AAGCAGTGTTTCAGTTTGTCCTGCGTTATTTTCCGACACAGTTCTTGTAGAATTTTAAAAGATCAATAGTTTTAGAAAAGTT CTAGAAAAAGTTCTGACGTTTAATATAGTTTATTTTATTTTTATTTAAAATTCTTGTAAAATAATTACATTATAATGTTATGT AATAGAGTTCCGTGTACAAAAGGATATGTTTCCTCTAGTTTTGAACGTATCTAAGCGCCTTCCAAAGAGTTCTGGTCGAAT CCGTTATTAATTAGTTAATAAAAAATTAATACCTTCCACGAAAAATATATATTTGTGTATATGGGTGAGACATTGGTCTATT TTCAAGAGTTTCGTGTACAAAAAAATATTTTTCCTCCAGTTCTGAATATATTTAAGCGCTTTTCGGGAGGCGTTTACATGTT CAAAACTGGAGGAAACATATATTTTTTGTACACGGAACTATATTATATAATATTATAAAATAATTATTTTACAATAATTTTA AATAAAAATTAAATAAACTATGTCAAACGCCAGAAATCTTTCTAAAACTCATGTAGAACTATAAATATTTTAAAATCTACA AGAATGGTGTCCGATAATGACACAGGACAAACTGAGACACTTCGTGAACCTAGCGTCTCACTTTGTCTTATGCGTTTTTTT TTTCGCTTTAAAGACCAGAACTATTTGTATTATCTATCAGGAACTATATAACTATTGTAAATGAAGCCAGAACTCTCTTTA ATTTTTTGTGAGCTTCCACGAAATAATACGCCAAATTAACAGACAC.
Derived:
[2] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:
  1. Wurm,Y., Wang,J., Riba-Grognuz,O., Corona,M., Nygaard,S., Hunt,B.G., Ingram,K.K., Falquet,L., Nipitwattanaphon,M. et al.
    The genome of the fire ant Solenopsis invicta.
    Proc Natl Acad Sci U S A 108(14), 5679-5684 (2011)

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