Repbase Reports |
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| 2014, Volume 14, Issue 8 |
| August 31, 2014 |
| Copyright © 2001-2024 - Genetic Information Research Institute, California |
| ISSN# 1534-830X |
| Page 2325 |
piggyBacA-1_NGr |
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Autonomous piggyBac transposon - consensus. |
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Submitted: 06-Feb-2012 |
Accepted: 06-FEB-2012 |
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Key Words: piggyBac; DNA transposon; Transposable Element; piggyBacA group; ATAT TSDs; piggyBacA-1N1_NGr; piggyBacA-1_NGr |
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Source: Naegleria gruberi |
Organism: Naegleria gruberi |
Taxonomy: Eukaryota; Heterolobosea; Schizopyrenida; Vahlkampfiidae; Naegleria |
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Authors: Kapitonov,V.V. and Jurka,J. |
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Title: piggyBacA - a novel group of piggyBac transposons. |
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Journal: Repbase Reports 14(8), 2325-2325 (2014) |
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Abstract: This transposon belongs to a novel piggyBacA group of piggyBac transposons. that also includes the piggyBacA-1_DPur, piggyBacA-1_DD, and piggyBacA-1_PPal transposons identified in Dictyostelids. The piggyBacA TPase is so distant from TPases encoded by other piggyBac transposons that their significant similarity to each other was detected only after 3 PSI-BLAST iterations with specific parameter values different from the default: e.g. gap cost penalties were equal to (10, 1), instead of (11, 1). piggyBacA-1_NGr is related to the piggyBacA-1N1_NGr non-autonomous transposon: they share common 58-bp and 70-bp 5'- and 3'- termini. Copies of both transposons are flanked by ATAT TSDs, contrary to the canonical TTAA TSDs.
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Derived: [1] (Consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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