Repbase Reports |
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| 2021, Volume 21, Issue 10 |
| October 31, 2021 |
| Copyright © 2001-2024 - Genetic Information Research Institute, California |
| ISSN# 1534-830X |
| Page 5416 |
Harbinger-1a_Car |
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Harbinger-1a_Car member of the family. |
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Submitted: 22-Sep-2021 |
Accepted: 31-Oct-2021 |
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Key Words: Harbinger; DNA transposon; Transposable Element; Nonautonomous; Harbinger-1a_Car |
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Source: Coffea arabica |
Organism: Coffea arabica |
Taxonomy: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea |
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Authors: Grabiele,M. and Aguilera,P.M. |
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Title: Harbinger-1_Car, a family of Harbinger transposons from the Coffea arabica genome. |
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Journal: Repbase Reports 21(10), 5416-5416 (2021) |
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Abstract: Analyzed genome of coffea: GCA_003713225.1 v1.0. Consensus of 517 total genomic TIR to TIR length copies; mean 96.3% identity to consensus. Additional features: TTA/TAA mainly TSDs; 16 nt TIRs; two pairs of subterminal inverted repeats, 12 and 14 nt in length respectively; all copies carry a full length Dorothy SINE, with poly A tail and both TSDs (GAATATACTA/GAACATACTA), at position 489 to 578 of the consensus.
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Derived: [1] (Consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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