Repbase Reports |
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| 2021, Volume 21, Issue 11 |
| November 30, 2021 |
| Copyright © 2001-2024 - Genetic Information Research Institute, California |
| ISSN# 1534-830X |
| Page 6300 |
LINE1-1_Ipa |
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LINE1-1_Ipa family. |
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Submitted: 26-Oct-2021 |
Accepted: 30-Nov-2021 |
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Key Words: L1; Non-LTR Retrotransposon; Transposable Element; autonomous; LINE1-1_Ipa |
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Source: Ilex paraguariensis |
Organism: Ilex paraguariensis |
Taxonomy: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Aquifoliales; Aquifoliaceae; Ilex |
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Authors: Aguilera,P.M. and Grabiele,M. |
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Title: LINE1-1_Ipa, a family of non-LTR retrotransposons from the yerba mate genome. |
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Journal: Repbase Reports 21(11), 6300-6300 (2021) |
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Abstract: De novo TE library from GCA_905181385.1. Consensus of 20 seqs, 16 with both termini and poly A tail and 4 truncated near 3 prime end; mean 75.3% identity to consensus, similarity -nt length and composition- falls just after ORF2 and up to 160 nt before 3 prime end. Additional features: all seqs inserted into telomeric-like sequences (TTTAGGG) near ends of scaffolds; two elements with intact ORFs (scaffolds CAJIXV010000345 and CAJIXV010000295).
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Derived: [1] (Consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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