Repbase Reports |
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| 2021, Volume 21, Issue 11 |
| November 30, 2021 |
| Copyright © 2001-2024 - Genetic Information Research Institute, California |
| ISSN# 1534-830X |
| Page 6569 |
LTR-3b_Car-LTR |
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LTR-3b_Car-LTR, LTR element from the Coffea arabica genome. |
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Submitted: 26-Oct-2021 |
Accepted: 30-Nov-2021 |
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Key Words: LTR Retrotransposon; Transposable Element; Nonautonomous; LTR-3b_Car-LTR |
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Source: Coffea arabica |
Organism: Coffea arabica |
Taxonomy: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea |
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Authors: Grabiele,M. and Aguilera,P.M. |
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Title: Retrotransposons from the Coffea arabica genome. |
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Journal: Repbase Reports 21(11), 6569-6569 (2021) |
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Abstract: Analyzed genome of coffea: GCA_003713225.1 v1.0. Consensus of 42 full length seqs; mean 95.5% identity to consensus. Additional features: 5 nt TSDs; elements with 1 or 2 LTRs occur, but in the latter the internal region is only conserved along 1000 nt contiguous to LTRs; two major subpopulations of LTR-3_Car occur (a and b), which consensus share 82.2% similarity.
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Derived: [1] (Consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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