Repbase Reports |
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| 2021, Volume 21, Issue 11 |
| November 30, 2021 |
| Copyright © 2001-2024 - Genetic Information Research Institute, California |
| ISSN# 1534-830X |
| Page 6576 |
hAT-2a_Csi |
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hAT-2a_Csi, a short DNA transposon from the tea genome. |
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Submitted: 26-Oct-2021 |
Accepted: 30-Nov-2021 |
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Key Words: hAT; DNA transposon; Transposable Element; Nonautonomous; hAT-2a_Csi |
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Source: Camellia sinensis |
Organism: Camellia sinensis |
Taxonomy: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia |
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Authors: Grabiele,M. and Aguilera,P.M. |
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Title: Transposons from the tea genome (Camellia sinensis). |
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Journal: Repbase Reports 21(11), 6576-6576 (2021) |
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Abstract: Analyzed genome of tea: GCA_013676235.1. Consensus of 65 entire length seqs (TIR to TIR); mean 96.8% identity to consensus. Additional features: 11 nt TIRs; 8 nt TSDs; one copy carries an entire LTR-1_Csi-LTR element (solo-1070 nt) flanked by AGTTG TSDs integrated at position 321 of the consensus sequence; four major subpopulations of hAT-2_Csi occur (a to d), which consensus share 79.6% similarity.
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Derived: [1] (Consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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