Repbase Reports |
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| 2021, Volume 21, Issue 7 |
| July 31, 2021 |
| Copyright © 2001-2024 - Genetic Information Research Institute, California |
| ISSN# 1534-830X |
| Page 3991 |
Dorothy |
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Dorothy, a novel SINE retroposon from the coffea genome (Coffea arabica). |
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Submitted: 14-Jul-2021 |
Accepted: 31-Jul-2021 |
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Key Words: SINE2/tRNA; SINE; Non-LTR Retrotransposon; Transposable Element; Dorothy |
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Source: Coffea arabica |
Organism: Coffea arabica |
Taxonomy: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea |
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Authors: Grabiele,M. and Aguilera,P.M. |
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Title: SINE retroposons from the Coffea arabica genome. |
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Journal: Repbase Reports 21(7), 3991-3991 (2021) |
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Abstract: 1..80 /feature="tRNA-related region" 11..22 /feature="A box" 56..66 /feature="B box" 81..91 /feature="tail". Analyzed genome of coffea: GCA_003713225.1 v1.0. This consensus is generated from 1000 entire length sequences with mean 83.4% identity to consensus. There exist 622 copies of Dorothy flanked by 10 nt TSDs (GAATATACTA/GAACATACTA) within a Harbinger-like element (817 nt; 54 nt TIRs) which TIRs and next 100 nt are 70% similar to corresponding regions of Harbinger-N1_NS and DNA3-6_Stu.
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Derived: [1] (Consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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