Repbase Reports |
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| 2021, Volume 21, Issue 7 |
| July 31, 2021 |
| Copyright © 2001-2024 - Genetic Information Research Institute, California |
| ISSN# 1534-830X |
| Page 3982 |
hAT-NA1_Can |
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hAT-NA1_Can, a short hAT element from the chili pepper genome (Capsicum annuum). |
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Submitted: 14-Jul-2021 |
Accepted: 31-Jul-2021 |
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Key Words: hAT; DNA transposon; Transposable Element; Nonautonomous; hAT-NA1_Can |
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Source: Capsicum annuum |
Organism: Capsicum annuum |
Taxonomy: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum |
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Authors: Aguilera,P.M. and Grabiele,M. |
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Title: Short transposable elements from the chili pepper genome (Capsicum annuum). |
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Journal: Repbase Reports 21(7), 3982-3982 (2021) |
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Abstract: 1..14 /feature="TIR" 27..36 /feature="subterminal inverted repeat" 156..165 /feature="subterminal inverted repeat" 176..189 /feature="TIR" Analyzed genome of chili pepper: GCF_000710875.1 v1.0. This consensus is generated from 30 entire length sequences with mean 89.3% identity to consensus. This element has 8 nt TSDs and 14 nt TIRs characteristic of hAT transposons. Its consensus is 85% and 82.1% similar to SINE_SO and SINE1_SO, respectively.
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Derived: [1] (Consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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