Repbase Reports |
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| 2021, Volume 21, Issue 8 |
| August 31, 2021 |
| Copyright © 2001-2024 - Genetic Information Research Institute, California |
| ISSN# 1534-830X |
| Page 4628 |
LTR-2c_Ipa-LTR |
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LTR-2c_Ipa-LTR, LTR element from the yerba mate genome. |
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Submitted: 14-Aug-2021 |
Accepted: 31-Aug-2021 |
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Key Words: LTR Retrotransposon; Transposable Element; LTR portion; LTR-2c_Ipa-LTR |
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Source: Ilex paraguariensis |
Organism: Ilex paraguariensis |
Taxonomy: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Aquifoliales; Aquifoliaceae; Ilex |
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Authors: Aguilera,P.M. and Grabiele,M. |
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Title: Retroposons from the yerba mate genome (Ilex paraguariensis). |
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Journal: Repbase Reports 21(8), 4628-4628 (2021) |
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Abstract: 1..5 /feature="inverted repeat region" 8..12 /feature="inverted repeat region" 2164..2168 /feature="inverted repeat region" 2171..2175 /feature="inverted repeat region" Analyzed genome of yerba mate: GCA_905181385.1. This consensus is generated from 50 entire length sequences with mean 86.7% identity to consensus. This element has 5 nt TSDs (measured in Solo-LTRs). There exist three major subpopulations of LTR-2_Ipa-LTR (a, b and c) which consensus share 84% sequence similarity.
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Derived: [1] (Consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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