Repbase Reports |
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| 2021, Volume 21, Issue 8 |
| August 31, 2021 |
| Copyright © 2001-2024 - Genetic Information Research Institute, California |
| ISSN# 1534-830X |
| Page 4632 |
SINE2-2_Ipa |
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SINE2-2_Ipa, a novel SINE retroposon from the yerba mate genome. |
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Submitted: 14-Aug-2021 |
Accepted: 31-Aug-2021 |
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Key Words: SINE2/tRNA; SINE; Non-LTR Retrotransposon; Transposable Element; SINE2-2_Ipa |
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Source: Ilex paraguariensis |
Organism: Ilex paraguariensis |
Taxonomy: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Aquifoliales; Aquifoliaceae; Ilex |
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Authors: Aguilera,P.M. and Grabiele,M. |
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Title: Retroposons from the yerba mate genome (Ilex paraguariensis). |
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Journal: Repbase Reports 21(8), 4632-4632 (2021) |
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Abstract: 1..82 /feature="tRNA-related region" 13..24 /feature="A box" 58..68 /feature="B box" 83..171 /feature="tRNA-unrelated region" 172..179 /feature="tail" Analyzed genome of yerba mate: GCA_905181385.1. This consensus is generated from the overall 13 copies of this element in yerba mate, resultant from 7 insertional events, with mean 89.7% identity to consensus. Solely 6 copies are entire length and 9 has TSDs of 6, 8, 13 or 14 nts. Its consensus is 68.9% similar to SINE2-5_Car.
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Derived: [1] (Consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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