Repbase Reports |
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| 2021, Volume 21, Issue 8 |
| August 31, 2021 |
| Copyright © 2001-2024 - Genetic Information Research Institute, California |
| ISSN# 1534-830X |
| Page 4624 |
SINE2-5c_Csi |
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SINE2-5c_Csi, a novel SINE retroposon from the tea genome. |
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Submitted: 15-Aug-2021 |
Accepted: 31-Aug-2021 |
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Key Words: SINE2/tRNA; SINE; Non-LTR Retrotransposon; Transposable Element; SINE2-5c_Csi |
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Source: Camellia sinensis |
Organism: Camellia sinensis |
Taxonomy: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia |
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Authors: Grabiele,M. and Aguilera,P.M. |
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Title: Retroposons from the tea genome (Camellia sinensis). |
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Journal: Repbase Reports 21(8), 4624-4624 (2021) |
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Abstract: 1..82 /feature="tRNA-related region" 12..22 /feature="A box" 55..65 /feature="B box" 83..147 /feature="tRNA-unrelated region" 148..158 /feature="tail" Analyzed genome of tea: GCA_013676235.1. This consensus is generated from 15 copies within duplicated genomic regions (1 insertional event), with mean 96.3% identity to consensus and 13 nt TSDs (TTGAGTAAAACAG/TTGAGTAAAACAG). There exist three major subpopulations of SINE2-5_Csi (a, b and c) which consensus share 68.7% sequence similarity.
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Derived: [1] (Consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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