Repbase Reports |
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| 2021, Volume 21, Issue 8 |
| August 31, 2021 |
| Copyright © 2001-2024 - Genetic Information Research Institute, California |
| ISSN# 1534-830X |
| Page 4615 |
SINE2-7_Csi |
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SINE2-7_Csi, a novel SINE retroposon from the tea genome. |
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Submitted: 15-Aug-2021 |
Accepted: 31-Aug-2021 |
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Key Words: SINE2/tRNA; SINE; Non-LTR Retrotransposon; Transposable Element; SINE2-7_Csi |
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Source: Camellia sinensis |
Organism: Camellia sinensis |
Taxonomy: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia |
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Authors: Grabiele,M. and Aguilera,P.M. |
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Title: Retroposons from the tea genome (Camellia sinensis). |
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Journal: Repbase Reports 21(8), 4615-4615 (2021) |
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Abstract: 1..82 /feature="tRNA-related region" 14..24 /feature="A box" 58..68 /feature="B box" 83..183 /feature="tRNA-unrelated region" 184..199 /feature="tail" Analyzed genome of tea: GCA_013676235.1. This consensus is generated from the overall 6 copies of this element in tea, resultant from 6 insertional events, with mean 97% identity to consensus. Solely 4 copies are entire length, another is 6 nt truncated at 5´ and the last holds the entire tRNA-related region truncated. All the copies has TSDs (17, 15, 14, 10 or 8 nts), 48.4% A-rich regions, and 1 is at intron of gene HYC85_003365. Its consensus is 70.4% similar to SINE2-1a_Can.
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Derived: [1] (Consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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