Repbase Reports |
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| 2022, Volume 22, Issue 11 |
| November 30, 2022 |
| Copyright © 2001-2024 - Genetic Information Research Institute, California |
| ISSN# 1534-830X |
| Page 7274 |
Mariner-N1b_Cba |
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Mariner-N1b_Cba, a novel transposon from the Capsicum baccatum genome. |
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Submitted: 08-Nov-2022 |
Accepted: 30-Nov-2022 |
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Key Words: Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous; Mariner-N1b_Cba |
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Source: Capsicum baccatum |
Organism: Capsicum baccatum |
Taxonomy: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum |
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Authors: Aguilera,P.M. and Grabiele,M. |
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Title: Short transposons from the Capsicum baccatum genome. |
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Journal: Repbase Reports 22(11), 7274-7274 (2022) |
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Abstract: De novo TE library from GCA_002271885.2. Consensus of 25 seqs; mean 80.11% identity to consensus. Additional features: 32 nt TIRs 95.30% identity; TA TSDs; 81.89% similar to Mariner-N9_STu of Repbase. There exist two major subpopulations of Mariner-N1_Cba (a and b) which consensus share 87.50% sequence similarity.
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Derived: [1] (Consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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