Repbase Reports

2022, Volume 22, Issue 11
November 30, 2022
Copyright © 2001-2024 - Genetic Information Research Institute, California
ISSN# 1534-830X
Page 7292

SINE2-10a_Cba

SINE2-10a_Cba, a novel SINE retroposon from the Capsicum baccatum genome.

Submitted:
08-Nov-2022
Accepted:
30-Nov-2022
Key Words:
SINE2/tRNA; SINE; Non-LTR Retrotransposon; Transposable Element; Au; SINE2-10a_Cba
Source:
Capsicum baccatum
Organism:
Capsicum baccatum
Taxonomy:
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
[] Authors:
Grabiele,M. and Aguilera,P.M.
Title:
SINE retroposons from the Capsicum baccatum genome.
Journal:
Repbase Reports 22(11), 7292-7292 (2022)
Abstract:
De novo TE library from GCA_002271885.2. Consensus of 260 seqs; mean 93.16% identity to consensus. Additional features: tRNA related region (1-81); A box (13-24); B box (57-67); tRNA-unrelated region (82-180); poly T tail (181-186). There exist nine major subpopulations of SINE2-10_Cba (a to i) which consensus diverge in length mainly by indels (186 to 153 nt) and base composition also, and share 72.30% sequence similarity.
Derived:
[1] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:

© 2001-2024 - Genetic Information Research Institute