Repbase Reports |
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| 2022, Volume 22, Issue 11 |
| November 30, 2022 |
| Copyright © 2001-2024 - Genetic Information Research Institute, California |
| ISSN# 1534-830X |
| Page 7290 |
SINE2-3c_Cba |
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SINE2-3c_Cba, a novel SINE retroposon from the Capsicum baccatum genome. |
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Submitted: 08-Nov-2022 |
Accepted: 30-Nov-2022 |
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Key Words: SINE2/tRNA; SINE; Non-LTR Retrotransposon; Transposable Element; SINE2-3c_Cba |
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Source: Capsicum baccatum |
Organism: Capsicum baccatum |
Taxonomy: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum |
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Authors: Grabiele,M. and Aguilera,P.M. |
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Title: SINE retroposons from the Capsicum baccatum genome. |
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Journal: Repbase Reports 22(11), 7290-7290 (2022) |
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Abstract: De novo TE library from GCA_002271885.2. Consensus of 50 seqs; mean 91.09% identity to consensus. Additional features: tRNA related region (1-82); A box (14-25); B box (58-68); tRNA-unrelated region (83-248); poly A tail (249-259); 82.70% similar to SolS-IIIb of Repbase. There exist three major subpopulations of SINE2-3_Cba (a, b and c) which consensus share 74.30% sequence similarity.
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Derived: [1] (Consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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