Repbase Reports |
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| 2022, Volume 22, Issue 5 |
| May 31, 2022 |
| Copyright © 2001-2024 - Genetic Information Research Institute, California |
| ISSN# 1534-830X |
| Page 3323 |
SINE2-4_Ipa |
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SINE2-4_Ipa, a novel SINE retroposon from the Ilex paraguariensis genome. |
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Submitted: 04-May-2022 |
Accepted: 31-May-2022 |
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Key Words: SINE2/tRNA; SINE; Non-LTR Retrotransposon; Transposable Element; SINE2-4_Ipa |
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Source: Ilex paraguariensis |
Organism: Ilex paraguariensis |
Taxonomy: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Aquifoliales; Aquifoliaceae; Ilex |
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Authors: Aguilera,P.M. and Grabiele,M. |
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Title: SINE2-4_Ipa, a novel SINE retroposon from the Ilex paraguariensis genome. |
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Journal: Repbase Reports 22(5), 3323-3323 (2022) |
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Abstract: De novo TE library from GCA_905181385.1. Consensus of 36 seqs with both termini, 31 with TSDs; mean 83.54% identity to consensus. Additional features: tRNA related region (1-93); A box (14-24); B box (69-79); tRNA-unrelated region (94-201); poly A tail (202-215); 9 to 19 nt in length TSDs (mean 15 nt), 70% AT-rich seqs; 63.6% similar to SINE2-2b_Csi of tea.
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Derived: [1] (Consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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