Repbase Reports |
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| 2023, Volume 23, Issue 1 |
| January 31, 2023 |
| Copyright © 2001-2024 - Genetic Information Research Institute, California |
| ISSN# 1534-830X |
| Page 613 |
SINE2-1_Cgl |
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SINE2-1_Cgl, a novel SINE retroposon from the Capsicum annuum var. glabriusculum genome. |
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Submitted: 27-Dec-2022 |
Accepted: 31-Jan-2023 |
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Key Words: SINE2/tRNA; SINE; Non-LTR Retrotransposon; Transposable Element; SINE2-1_Cgl |
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Source: Capsicum annuum |
Organism: Capsicum annuum |
Taxonomy: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum |
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Authors: Grabiele,M. and Aguilera,P.M. |
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Title: SolS-X, a novel SINE retroposon family from Solanaceae. |
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Journal: Repbase Reports 23(1), 613-613 (2023) |
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Abstract: Analyzed genome: Chiltepin_v2.0. Consensus of 100 seqs; mean 81.50% identity to consensus. Additional features: tRNA related region (1-82); A box (14-24); B box (58-68); tRNA-unrelated region (83-117); poly A tail (118-126); SolS-X consenus sequences in seven genera of Solanaceae, including SINE2-9_Cba, share 89.00% similarity.
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Derived: [1] (Consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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