Repbase Reports |
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| 2023, Volume 23, Issue 1 |
| January 31, 2023 |
| Copyright © 2001-2024 - Genetic Information Research Institute, California |
| ISSN# 1534-830X |
| Page 602 |
SINE2-3a_Cch |
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SINE2-3a_Cch, a novel SINE retroposon from the Capsicum chinense genome. |
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Submitted: 28-Dec-2022 |
Accepted: 31-Jan-2023 |
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Key Words: SINE2/tRNA; SINE; Non-LTR Retrotransposon; Transposable Element; SINE2-3a_Cch |
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Source: Capsicum chinense |
Organism: Capsicum chinense |
Taxonomy: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum |
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Authors: Aguilera,P.M. and Grabiele,M. |
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Title: SINE families Au and SolS-I to VII from the Capsicum chinense genome. |
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Journal: Repbase Reports 23(1), 602-602 (2023) |
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Abstract: Analyzed genome: GCA_002271895.2. Consensus of 50 seqs; mean 85.38% identity to consensus. Additional features: tRNA related region (1-80); A box (13-23); B box (56-66); tRNA-unrelated region (81-213); poly A tail (214-223); 96.60% similar to SINE2-3a_Cba (SolS-III). There exist three major subpopulations of SINE2-3_Cch (a, b and c) which consensus share 68.90% sequence similarity.
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Derived: [1] (Consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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