Repbase Reports |
|---|
| 2023, Volume 23, Issue 1 |
| January 31, 2023 |
| Copyright © 2001-2024 - Genetic Information Research Institute, California |
| ISSN# 1534-830X |
| Page 631 |
SINE2-8b2_Cch |
|||
|---|---|---|---|
SINE2-8b2_Cch, a novel SINE retroposon from the Capsicum chinense genome. |
|||
|
Submitted: 27-Dec-2022 |
Accepted: 31-Jan-2023 |
||
|
Key Words: SINE2/tRNA; SINE; Non-LTR Retrotransposon; Transposable Element; SINE2-8b2_Cch |
|||
|
Source: Capsicum chinense |
Organism: Capsicum chinense |
Taxonomy: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum |
|
| [] |
Authors: Aguilera,P.M. and Grabiele,M. |
||
|
Title: SolS-XI, a novel SINE retroposon family from Solanaceae. |
|||
|
Journal: Repbase Reports 23(1), 631-631 (2023) |
|||
Abstract: Analyzed genome: GCA_002271895.2. Consensus of 50 seqs; mean 94.59% identity to consensus. Additional features: tRNA related region (1-81); A box (13-23); B box (57-67); tRNA-unrelated region (82-181); poly A tail (182-191); consensus sequences of SolS-XI subfamily 3 in Capsicum (SINE2-1c_Can, SINE2-2c_Cgl, SINE2-8b1_Cch, SINE2-8b2_Cch, SINE2-8b_Cba) share 98.30% similarity; this family is absent from other Solanaceae genomes (Datura stramonium, Jaltomata sinuosa, Lycium barbarum, Nicotiana tabacum, Petunia axillaris, Solanum lycopersicum, Solanum tuberosum).
|
|||
|
Derived: [1] (Consensus) |
|||
|
Download Sequence - Format: IG, EMBL, FASTA |
|||
|
References: |
|||