Repbase Reports |
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| 2023, Volume 23, Issue 2 |
| February 28, 2023 |
| Copyright © 2001-2024 - Genetic Information Research Institute, California |
| ISSN# 1534-830X |
| Page 1306 |
SINE2-1_Mes |
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SINE2-1_Mes, a novel SINE retroposon from the mandioca genome. |
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Submitted: 01-Feb-2023 |
Accepted: 28-Feb-2023 |
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Key Words: SINE2/tRNA; SINE; Non-LTR Retrotransposon; Transposable Element; SINE2-1_Mes |
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Source: Manihot esculenta |
Organism: Manihot esculenta |
Taxonomy: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot |
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Authors: Grabiele,M. and Aguilera,P.M. |
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Title: Novel SINE retroposons from the mandioca genome. |
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Journal: Repbase Reports 23(2), 1306-1306 (2023) |
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Abstract: De novo TE library from GCF_001659605.2. Consensus of 112 seqs >50 nt and poly T tail; mean 76.46% identity to consensus. Additional features: tRNA related region (1-81); A box (13-23); B box (57-67); tRNA-unrelated region (82-162); poly T tail (163-168); 107 copies in genes, 2 in CDS. SINE2-1_Mes is 95.20% similar to SINE2-1_JC (Au family) of Jatropha curcas, also Euphorbiaceae.
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Derived: [1] (Consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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