Repbase Reports

2023, Volume 23, Issue 3
March 31, 2023
Copyright © 2001-2024 - Genetic Information Research Institute, California
ISSN# 1534-830X
Page 1940

SINE2-11b_Ipa

SINE2-11b_Ipa, a novel SINE retroposon from the Ilex paraguariensis genome.

Submitted:
01-Mar-2023
Accepted:
31-Mar-2023
Key Words:
SINE2/tRNA; SINE; Non-LTR Retrotransposon; Transposable Element; SINE2-11b_Ipa
Source:
Ilex paraguariensis
Organism:
Ilex paraguariensis
Taxonomy:
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Aquifoliales; Aquifoliaceae; Ilex
[] Authors:
Grabiele,M. and Aguilera,P.M.
Title:
Novel SINE retroposons from the yerba mate genome.
Journal:
Repbase Reports 23(3), 1940-1940 (2023)
Abstract:
De novo TE library from GCA_905181385.1. Consensus of 50 seqs; mean 77.94% identity to consensus. Additional features: tRNA related region (1-103); A box (15-25); B box (79-89); tRNA-unrelated region (104-290); poly A tail (291-305). SINE2-11a_Ipa and SINE2-11b_Ipa share 67.10% similarity.
Derived:
[1] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:

© 2001-2024 - Genetic Information Research Institute