Repbase Reports

2023, Volume 23, Issue 3
March 31, 2023
Copyright © 2001-2024 - Genetic Information Research Institute, California
ISSN# 1534-830X
Page 1943

SINE2-4b_Ipa

SINE2-4b_Ipa, a novel SINE retroposon from the Ilex paraguariensis genome.

Submitted:
01-Mar-2023
Accepted:
31-Mar-2023
Key Words:
SINE2/tRNA; SINE; Non-LTR Retrotransposon; Transposable Element; SINE2-4b_Ipa
Source:
Ilex paraguariensis
Organism:
Ilex paraguariensis
Taxonomy:
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Aquifoliales; Aquifoliaceae; Ilex
[] Authors:
Grabiele,M. and Aguilera,P.M.
Title:
Novel SINE retroposons from the yerba mate genome.
Journal:
Repbase Reports 23(3), 1943-1943 (2023)
Abstract:
De novo TE library from GCA_905181385.1. Consensus of 50 seqs; mean 80.30% identity to consensus. Additional features: tRNA related region (1-93); A box (14-25); B box (69-79); tRNA-unrelated region (94-221); poly A tail (222-232). SINE2-4_Ipa, SINE2-4b_Ipa and SINE2-4c_Ipa share 66.70% similarity.
Derived:
[1] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:

© 2001-2024 - Genetic Information Research Institute