Repbase Reports |
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| 2023, Volume 23, Issue 3 |
| March 31, 2023 |
| Copyright © 2001-2024 - Genetic Information Research Institute, California |
| ISSN# 1534-830X |
| Page 1944 |
SINE2-4c_Ipa |
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SINE2-4c_Ipa, a novel SINE retroposon from the Ilex paraguariensis genome. |
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Submitted: 01-Mar-2023 |
Accepted: 31-Mar-2023 |
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Key Words: SINE2/tRNA; SINE; Non-LTR Retrotransposon; Transposable Element; SINE2-4c_Ipa |
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Source: Ilex paraguariensis |
Organism: Ilex paraguariensis |
Taxonomy: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Aquifoliales; Aquifoliaceae; Ilex |
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Authors: Grabiele,M. and Aguilera,P.M. |
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Title: Novel SINE retroposons from the yerba mate genome. |
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Journal: Repbase Reports 23(3), 1944-1944 (2023) |
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Abstract: De novo TE library from GCA_905181385.1. Consensus of 50 seqs; mean 78.84% identity to consensus. Additional features: tRNA related region (1-92); A box (14-24); B box (68-78); tRNA-unrelated region (93-219); poly A tail (220-232). SINE2-4_Ipa, SINE2-4b_Ipa and SINE2-4c_Ipa share 66.70% similarity.
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Derived: [1] (Consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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