Repbase Reports

2023, Volume 23, Issue 4
April 30, 2023
Copyright © 2001-2024 - Genetic Information Research Institute, California
ISSN# 1534-830X
Page 2288

Helitron-N8_Ipa

Helitron-N8_Ipa, a novel transposon from the Ilex paraguariensis genome.

Submitted:
08-Apr-2023
Accepted:
30-Apr-2023
Key Words:
Helitron; DNA transposon; Transposable Element; Nonautonomous; Helitron-N8_Ipa
Source:
Ilex paraguariensis
Organism:
Ilex paraguariensis
Taxonomy:
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Aquifoliales; Aquifoliaceae; Ilex
[] Authors:
Aguilera,P.M. and Grabiele,M.
Title:
Helitron transposons from the yerba mate genome.
Journal:
Repbase Reports 23(4), 2288-2288 (2023)
Abstract:
De novo search via RepeatModeler from GCA_905181385.1. Consensus of 50 seqs >600 nt; mean 92.01% identity to consensus. Additional features: from 2936 to 3376 is repeated the 5 prime region with 78.80% similarity; a stretch of 429 nt of the 5 prime region of Helitron-3_Ipa and Helitron-N8_Ipa share 73.90% similarity; flanked by A and T nucleotides, respectively, embedded in min. 10 nt AT-rich regions.
Derived:
[1] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:

© 2001-2024 - Genetic Information Research Institute