Repbase Reports
2023, Volume 23, Issue 4
April 30, 2023
Copyright © 2001-2024 - Genetic Information Research Institute, California
ISSN# 1534-830X
Page 2228

Mariner-50_OT

DNA transposon, consensus.

Submitted:
14-Oct-2014 		Accepted:
30-Apr-2023
Key Words:
Mariner/Tc1; DNA transposon; Transposable Element; Mariner-50_OT
Source:
Oxytricha trifallax 		Organism:
Oxytricha trifallax 		Taxonomy:
Eukaryota; Alveolata; Ciliophora; Intramacronucleata; Spirotrichea; Stichotrichia; Sporadotrichida; Oxytrichidae; Oxytrichinae; Oxytricha
[] Authors:
Bao,W.
Title:
DNA transposons from the Oxytricha trifallax micronuclear genome.
Journal:
Repbase Reports 23(4), 2228-2228 (2023)
Abstract:
>97% identical to the consensus. Both 5'-, 3'-end are determined. DDE-Tpase coding region is degenerated. >Mariner-50_OT_1p 586-3375 MRNISAQSLGSKTLKCKVQPKKLKFYQLRLWDLNQDLIKNQLRQPQILIN LNQESYRQSQLKAHLQMDTEQGSQSSIQSFSDKDNNKKDYQAIFPENILV PGDAETPGFLGMQAYEGDLETNARKRGRKPVYDGAEYPLLIDRAKLILPT KNYDIEKLLELEEFXPLKDSKDLPRFISKYILNKTSKSFSKSVRAQSVAG LDVQQKIKVDFSQLQQPYVPFYTPKGNIFNQQNTLTPQANYGAKIQSELT SNYLREYMLLKPQERYQFIEQICQRNSQSLLEFLINLKTTCSSSFCDGMF GLIHELNLNSKMDLQIKTRLFVQSLLYYRNELIVIDQDLLKNSMTLLAQR PNSEQTLGLSNYIFINEVEQFSQLQEELVLLDSKNIGIIPLMVGTFAQFK VDPQVVRLLPNTLQCLNKPFIQVLKQNKGLRLIGEIPINLVGDFVQICAL CQSRNYTELDQLINNIKETFIKKWDYLDQADFSMLIAQISVELKERNPSW IGKVTEIAEVVKQITFIQIEKGVKNRPDLIADLINGNLHSIKQIIKNPKH VEDLSGQQFYKMVGKFKKLNKGNEQAQKFCYELQENITKQSQQIKSLETL IGFNLLALQKLCLAYSMWTSEVFQFINFGIGNCKTLLCAIIAVILTKEQQ RSTIILGKNDYLILRDEKRFQNTIIKSNLNINYNQYENKLGVYYMTQKYF ESQIYDKPFREFLKNSILIVDEYDWLVFEGSPTAMSDWIRFFRIPHKLIC LTGSTLTQKEEICLDVAFGTKEIKFPTLSSLKSDKKVHASDILLNSCQQD YCKYLYELCMKQTLQTPVIIVASGTYQIIDAYFKKFRELQFYSMKGVKGS KADAYLEGKFNIRNSSKRFGVLLLTDMQGRGTDLQTSKEIEDSGGLYLVI SDVFSKRTTQQIIGRLQDQRIKGNGDMCC >Mariner-50_OT_2p (DDE-Tpase, degenrated) ~6098-~6748 SISRIRTFLKEETSLSFRKQYYLSP*VNILKSKI*R*IAAFYXIQNIFDGKTIINIDES*IKFSQNRSKS WKARGLLNHTT*SKRLDQIGIVAGLTSQSEAFFVVNKGKTCSQTVYYFLLQLVNHLDIRDENWRATTIIM LDNASYHRSEFLTRKLRLLNIPTMYLGPYHFMLAPVERFFA*IKRGITYNSLNT*N*LNAQIKKMIK TGRRCITLRF >Mariner-50_OT_3p 8568-9917 MGRGKQSNLNNAFKNKKDNESRTAYLCIYCSQLNRPNQLMSSKNIRGHVI TSHKTFLTNQNISLQGFKVVEGRDYLKTSQKIQVSDTSEVKNSIRAKSEY VVDLLKQKTRDYDSFESGDEQMEVERQEFNQVLSTFQENGYLNQLEKINI TTDRKPDFFSEVNEQLQCKHQMINHLIKCQQIQKQNKKAEKVIIDFVTPE NQNKKIAQRVKSLSDNQVNQVEFTKKNLVNQIQVYKNNLLNDNLQKQHTV NKFINKCFNYLLELVEEVINYLYSEQQMILSDTIQQIQQQSDIDFKKIKE QIDQERQQYDEILETYQGILDKVDENLGNNLKELNKIPSIPINADLTKKG FCKSLSSVHQKIYGQKFSAVAIDYAWPIDLKTESGNQFIPYQTLSMKDLY ELEIEDLQDQGYLFMWTVAQKFVDAIAFMLLKGYRQGNHIAKHFQLQNC.
Derived:
[1] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:
  1. Chen,X., Bracht,J.R., Goldman,A.D., Dolzhenko,E., Clay,D.M., Swart,E.C., Perlman,D.H., Doak,T.G., Stuart,A. et al.
    The Architecture of a Scrambled Genome Reveals Massive Levels of Genomic Rearrangement during Development.
    Cell 158(5), 1187-1198 (2014)

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