Repbase Reports
2023, Volume 23, Issue 4
April 30, 2023
Copyright © 2001-2024 - Genetic Information Research Institute, California
ISSN# 1534-830X
Page 2229

Mariner-51_OT

DNA transposon, consensus.

Submitted:
22-Oct-2014 		Accepted:
30-Apr-2023
Key Words:
Mariner/Tc1; DNA transposon; Transposable Element; Mariner-51_OT
Source:
Oxytricha trifallax 		Organism:
Oxytricha trifallax 		Taxonomy:
Eukaryota; Alveolata; Ciliophora; Intramacronucleata; Spirotrichea; Stichotrichia; Sporadotrichida; Oxytrichidae; Oxytrichinae; Oxytricha
[] Authors:
Bao,W.
Title:
DNA transposons from the Oxytricha trifallax micronuclear genome.
Journal:
Repbase Reports 23(4), 2229-2229 (2023)
Abstract:
>96% identical to the consensus. Both 5'-, 3'-end are determined. >Mariner-51_OT_1p (translocase subunit SecA) 1737-4019 MGVLPMMTSIFQQWRIDFQVVRLLPNTLFILNKPFIKVMKEDYGLGLIRG VPIEVVQYIITISSLSQAQSEDQLKKFLLGMREIFNNKWDFLNQSQYINF LKKLSQLLTTNNSMWTRKLEEILKMAQDICFLMIEKKQEDCQKIIEDLLL GNSRNLDQMLSLPKSANQFTSDQKKQALQQFQERNDGEVSVLKFVSSGYK SAFKISDFQKQLEKNLQFKLLPLQTLCLNYILDSSNNRLFINLGMGNGKT LLTTCSAIHLAIKHDTPVFIIGKNDHLIQRDERCFEQLIQQFNLRVNVNE YENKSGLYYLTQKDFETFCEDPQFLNVLVDSSIVIDEQDWILFDGAVPSM LSLIRHVLKAKQLIAMTGSRLRMKEKQIIETFFMTEEIDFPEISSINGNK KQHLLDKIVVTSTQDYFKKLEEIINKHSSLVPIIIVASTSYQMLENWLKK QSQVSFVSGKHLRGCKIEATLESNLCTRDKHGKFGVFMLSETQGRGTDIK TSQEIEKSGGLYLIMADIFHRRIQDQIVGRVGRLDNKGQWHYLVYSHGNT STIEQLVKLKQEQKDNENHFRLLKLHQALTQECDNQIQVATKIFQHSEMQ LNKNETLKPSNHFNQGETAKLSDSSSTIVDGTSDQCDQNQESQTQGDRLN GKELKTARRLFNSKEEQKHSTQSIDALPAHIFQNFEIKPFDSSQFTPFDE GRLLPQRSVSLAHKRISASDKKLILGKRTLRVDDPFFHDPPNELEISSQS DSEKSRMRLD >Mariner-51_OT_2p (DDE-Tpase) 5054-6889 MSSWLRWMPPYLIINLQNNYIEVEVILVKFQFFGLDEKHLHHERNGFPQK GIIYKIFILSLKLLINYQSQNILNMEKLRQSDIRFFLGGNDNSEIPDEDE IVAHENLSVTIDYKLIYCTFIDYQDQGNEEIECLNLDSLILTSLENAQQN ILKMKQCNFQSFDPRADVKESVSNISDDKTIEQDILQEITSTIGRLWIKF PSMAQIEEFIQIAGDGLNINISSMIKQFIKNDGKPLSQINTQAYDDIEEF KNYFPVKWRKVKNKLKKWSNVEKASLSIQQNSLTLNALRRQYSLSIHEAR TIKNLRKIQIQQKQVPCESKKYGLSRQAQQLILKFIKQNNKLIKPSDIQT FIQDQTRVKVQTQQVRKFLRNTLNMLPKKVSYMSQRSIASDSINQRARAA IHYVRLLSMAKVLINIDESSIQFSRQNEKAWAPKYQQLFCADSKRYQQIG LIAALSCDGRVYFQLFKGKNNSIGVYYFILQLIDALEKLNPNWRENHILM LDNASYHRSSYLREKLSMLKISTFFLGPYQFDLAPIEKLFAFIKKGNLGQ ILDSTVADQSQDPRKIIQRENQTHKQLKELTQIIRKNNYDWCKKLFYSRF PFVFDYLCSKV >Mariner-51_OT_3p (methylase) 8299-10342 MKSLPLKDENEDDKKKKPSLNSANIFCLYCYVTKNYKNSFLLYKNKSKHN ERHHSITNSEANKQIRENFNNKSFMILNSNLNFQDFAFLTDDELDTYYQN CHQQFSINIINKIISERIFARSQIDEMDLREHQNVQNINVDEPILQHHQQ NFLNSQHEQNPNDMLNLNEEEITLEMAQKHINEKYKKYIDDFKSDPFILK FNNNPLILVLQKQLLPGDMYDPYLKVADDKNIIKDNKEQFKFPIIINDLR LKPEYYVNMQKSLSFNSACMITKGYKNIKLTKEDITFEQSSILYQVLKKN NNQSNQEQKQCDNKMQVPQLTANQQNALNIIQKLTNKKSIPIVADVTHYE IWKEISRAQIRFGGKLFDVIITDPPWDNFDVNAKKGFKPSYDLLKDKQIF QIPFNLLQKDGFVIMWVVNAKQEMALNMMGKLGYTQVFIPIQQLLFRFVD EFIWTKTKNYGQVRSGNGHATRHAFEKAFIFGIGNYQIRKDGFKVPNVVA APIRNASQKPDEQYALAESLCPGGFILEIFARNHNLRDGVVSVGNQI.
Derived:
[1] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:
  1. Chen,X., Bracht,J.R., Goldman,A.D., Dolzhenko,E., Clay,D.M., Swart,E.C., Perlman,D.H., Doak,T.G., Stuart,A. et al.
    The Architecture of a Scrambled Genome Reveals Massive Levels of Genomic Rearrangement during Development.
    Cell 158(5), 1187-1198 (2014)

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