Repbase Reports |
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2023, Volume 23, Issue 4 |
April 30, 2023 |
Copyright © 2001-2024 - Genetic Information Research Institute, California |
ISSN# 1534-830X |
Page 2209 |
Mariner-6_OT |
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DNA transposon, consensus. |
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Submitted: 24-Sep-2014 |
Accepted: 30-Apr-2023 |
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Key Words: Mariner/Tc1; DNA transposon; Transposable Element; Mariner-6_OT |
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Source: Oxytricha trifallax |
Organism: Oxytricha trifallax |
Taxonomy: Eukaryota; Alveolata; Ciliophora; Intramacronucleata; Spirotrichea; Stichotrichia; Sporadotrichida; Oxytrichidae; Oxytrichinae; Oxytricha |
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Authors: Bao,W. |
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Title: DNA transposons from the Oxytricha trifallax micronuclear genome. |
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Journal: Repbase Reports 23(4), 2209-2209 (2023) |
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Abstract: > 96% identical to the consensus. TIRs are 103-bp long. /1248-4004 /product="Mariner-6_OT_1p" /note="DEAD-like helicase" /translation="MKVSEFQTTVSLASESMQAPRPLPQLVINYGSIIGHEMLVKHFESFKQSN YQQKEQILQDIMARNTQSLFSFLQHFEMANEPQVNQGLFYLITELISSNQ KLDQDSKARIFLAALSYYTGEKYQPEENLIQEAILLLIRSPNARQAIGLA NLVFITEATCLSKQLAIVQKLNDSNPGIIQLLAQTWHYFSIDPQVIKLIP NSFFIMNVPFIILLKQDCGLNLIRDIPVEYTEYFVRICALCSAPNLESLK DYISSTRATFLQKQEVIDKVSMVHFMKGLASRLQSRDQQWVGKIEQIRKV QQLIVNAQVEKNVQLSIHTIDNCLNCDFSDLDRIMQLPRTMEAFSEKAVN DLLQLFKNENLQNQVASRFNSRSPEELLRVSAELETLEQNLGFKFYCSQV LCLNYICDNLNSNHFIHFGIGNGKTLICIALAILIALKTQRSVFILSKNE HLVQRDFKRYQRVIKAMQLNCNLNFFAKDTGIYFYTQPQLKKMQKNSKAV SVWQQSYVLVDEYDWIMFDGSVDTIINSLEYFQQAHKVIGFSGSNLSFTE ENCLKLAFQATPVVFPTLDKLQGNKKTQYPDVFVSTNQSDYLAKIKEIII EQLSHSPVLIVASTNYNAIEIGLLRSGYDFTSLSRGQAANIESMIEGRYL MKNAKKEYGIYLLNEAHGRGTDIQTNDEINQNGGSYLIIADVFSKRSEEQ IIGRIGRLNTKGRWQRVLYRLNSKDSAEQLLYVEQNEIDLILDKKFNEVQ FNLQDKQEAIDMDIIDQAKEPEVPSEQIIAIDHQVAVVKAIVEKIVEKVE SSFIGAKKDIEEAKKASEEEMKTEAVAEEPDTQSKLGFYQPSIIEFIVEK MSQNPVLQDKPISEVEKIFKNGVRRQYEEITQEPGRERSKSKEGKKQTNK RSRKAYEKAEQIKDLVEK" /5274-6770 /product="Mariner-6_OT_2p" /note="DDE-Tpase" /translation="MIRFPHADFLPAPKQFIIRKLSTELMESSSKKRQSKLVEFFQQEEEDKSS SSSDSERSSSSETDDESNTADYITTNMLYQRNITVADVEIETVSKREMLN YYYDLEDSLESLNFKGFIIDPKETYRVSKLGGFKESLLDGHQIQTLGQIT LEIYTDYTQSELEPQGMLERAPLIDMKELEQKVLENHKMKDSLPVFGQHT QLQAIVPRRQLKIMRKEKEQQQKELKLAQESQRLRMSEKLNCQQIMKRLG ISYYKLRRYLNNPLKKANFWNLKQVNRGKYKKLHSRARTHIVNMLTYDQV PIQISDIQKSLVSKIQLHCSKQMIRRFLKNELMMTYKQVKQITNLHNNNS SKLQRQYAAQQFILFLSEGKRIINIDESVLHQTDERRRGWTAPYVKNRVT KSQRLSQMNLIIGVSSTGELFYTVNRGRTNQHSFMYFLCKLALTLDDIDL EWRKNTVIMIDNAPYHRSQEVMAKYDNLKLPLMFLGPYHYRLAPAELMYS WIKNRDLNPLNTRAQSKQVMISQPLQRLLGRLYERAWHEYKQNKSESCKK MLLSCLNCCFGIYLTQRLVTIQGDLTQVLSKVYYSEKSKSNLKILKAFLQ QKFSFKPYVKLFLIRLNSLNKSSYSFISHKSF".
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Derived: [2] (Consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References:
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