Repbase Reports |
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| 2023, Volume 23, Issue 4 |
| April 30, 2023 |
| Copyright © 2001-2024 - Genetic Information Research Institute, California |
| ISSN# 1534-830X |
| Page 2681 |
SINE2-11c_Atr |
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SINE2-11c_Atr, a novel SINE retroposon from the Amborella trichopoda genome. |
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Submitted: 08-Apr-2023 |
Accepted: 30-Apr-2023 |
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Key Words: SINE2/tRNA; SINE; Non-LTR Retrotransposon; Transposable Element; SINE2-11c_Atr |
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Source: Amborella trichopoda |
Organism: Amborella trichopoda |
Taxonomy: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella |
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Authors: Grabiele,M. and Aguilera,P.M. |
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Title: SINE retroposons from the Amborella genome. |
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Journal: Repbase Reports 23(4), 2681-2681 (2023) |
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Abstract: De novo TE library from GCA_000471905.1. Consensus of 5 entire or nearly entire length and poly A tail seqs; mean 74.52% identity to consensus. Additional features: tRNA related region (1-71; 112-182; 227-297; 337-407; 450-531); A box (14-25; 125-136; 240-251; 350-361; 463-474); B box (57-67; 168-178; 283-293; 393-403; 506-516); LINE-related region (72-111; 183-226; 298-336; 408-449; 551-589); unknown origin (532-550); poly A tail (590-601). SINE2-11c_Atr is identical to SINE2-11a_Atr but with three extra forward regions related to SINE2-6_Atr; exist two copies with visible TSDs (scaffold 45, AATCAACGTCAA/AATCAACGTTAA; scaffold 65, AACTTTATAGAAACCA/ATCCTTGTAGAAACCA). 20 consensus seqs belonging to SINE2-1_Atr to SINE2-11_Atr share the L1 lineage origin (L1-5_Atr and related seqs of Repbase).
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Derived: [1] (Consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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