Repbase Reports |
|---|
| 2023, Volume 23, Issue 4 |
| April 30, 2023 |
| Copyright © 2001-2024 - Genetic Information Research Institute, California |
| ISSN# 1534-830X |
| Page 2661 |
SINE2-1c1_Atr |
|||
|---|---|---|---|
SINE2-1c1_Atr, a novel SINE retroposon from the Amborella trichopoda genome. |
|||
|
Submitted: 08-Apr-2023 |
Accepted: 30-Apr-2023 |
||
|
Key Words: SINE2/tRNA; SINE; Non-LTR Retrotransposon; Transposable Element; SINE2-1c1_Atr |
|||
|
Source: Amborella trichopoda |
Organism: Amborella trichopoda |
Taxonomy: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella |
|
| [] |
Authors: Grabiele,M. and Aguilera,P.M. |
||
|
Title: SINE retroposons from the Amborella genome. |
|||
|
Journal: Repbase Reports 23(4), 2661-2661 (2023) |
|||
Abstract: De novo TE library from GCA_000471905.1. Consensus of 50 seqs; mean 90.90% identity to consensus. Additional features: tRNA related region (1-82); A box (14-25); B box (58-68); unknown origin (83-101); LINE-related region (102-140; poly A tail (141-148). SINE2-1_Atr members (a, b, c1, c2, c3) and SINE-1_ATr of Repbase share 70.00% similarity. 20 consensus seqs belonging to SINE2-1_Atr to SINE2-11_Atr share the L1 lineage origin (L1-5_Atr and related seqs of Repbase).
|
|||
|
Derived: [1] (Consensus) |
|||
|
Download Sequence - Format: IG, EMBL, FASTA |
|||
|
References: |
|||