Repbase Reports

2023, Volume 23, Issue 4
April 30, 2023
Copyright © 2001-2024 - Genetic Information Research Institute, California
ISSN# 1534-830X
Page 2674

SINE2-7_Atr

SINE2-7_Atr, a novel SINE retroposon from the Amborella trichopoda genome.

Submitted:
08-Apr-2023
Accepted:
30-Apr-2023
Key Words:
SINE2/tRNA; SINE; Non-LTR Retrotransposon; Transposable Element; SINE2-7_Atr
Source:
Amborella trichopoda
Organism:
Amborella trichopoda
Taxonomy:
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
[] Authors:
Grabiele,M. and Aguilera,P.M.
Title:
SINE retroposons from the Amborella genome.
Journal:
Repbase Reports 23(4), 2674-2674 (2023)
Abstract:
De novo TE library from GCA_000471905.1. Consensus of 50 seqs; mean 82.15% identity to consensus. Additional features: tRNA related region (1-89); A box (14-26); B box (68-78); LINE-related region (90-121; poly A tail (122-136). At the scaffold 38 there is a tandem repeat of almost four copies of SINE2-7_Atr (545 nt, including TSDs, GARAAAGAAAAAAAAA); 31 nt upstream this region exists an inverted repetition (532 nt) of that SINE block; the whole SINE2-7_Atr rich region is embedded in a 2355 nt inverted repetition able to form a perfect hairpin. 20 consensus seqs belonging to SINE2-1_Atr to SINE2-11_Atr share the L1 lineage origin (L1-5_Atr and related seqs of Repbase).
Derived:
[1] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:

© 2001-2024 - Genetic Information Research Institute