Repbase Reports |
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| 2023, Volume 23, Issue 4 |
| April 30, 2023 |
| Copyright © 2001-2024 - Genetic Information Research Institute, California |
| ISSN# 1534-830X |
| Page 2676 |
SINE2-9a_Atr |
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SINE2-9a_Atr, a novel SINE retroposon from the Amborella trichopoda genome. |
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Submitted: 08-Apr-2023 |
Accepted: 30-Apr-2023 |
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Key Words: SINE2/tRNA; SINE; Non-LTR Retrotransposon; Transposable Element; SINE2-9a_Atr |
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Source: Amborella trichopoda |
Organism: Amborella trichopoda |
Taxonomy: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella |
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Authors: Grabiele,M. and Aguilera,P.M. |
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Title: SINE retroposons from the Amborella genome. |
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Journal: Repbase Reports 23(4), 2676-2676 (2023) |
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Abstract: De novo TE library from GCA_000471905.1. Consensus of 25 seqs; mean 83.13% identity to consensus. Additional features: tRNA related region (1-70; 113-210); A box (13-24; 126-137); B box (56-66; 169-179); LINE-related region (71-112; 236-274); unknown origin (211-235); poly A tail (275-285). SINE2-9a_Atr is heterodimeric and exist copies with visible TSDs; forward region is related to SINE2-6_Atr (87% of length, up to the poly T stretch of the second tandem repetion) and second one to SINE2-1b_Atr (full length); copies of SINE2-9a_Atr with five forward tandem repetitions of the SINE2-6_Atr related region and visible poly A tail also occur (730 nt mean) but without detectable TSDs. 20 consensus seqs belonging to SINE2-1_Atr to SINE2-11_Atr share the L1 lineage origin (L1-5_Atr and related seqs of Repbase).
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Derived: [1] (Consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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