Repbase Reports

2023, Volume 23, Issue 4
April 30, 2023
Copyright © 2001-2024 - Genetic Information Research Institute, California
ISSN# 1534-830X
Page 2663

SINE2-9c_Atr

SINE2-9c_Atr, a novel SINE retroposon from the Amborella trichopoda genome.

Submitted:
08-Apr-2023
Accepted:
30-Apr-2023
Key Words:
SINE2/tRNA; SINE; Non-LTR Retrotransposon; Transposable Element; SINE2-9c_Atr
Source:
Amborella trichopoda
Organism:
Amborella trichopoda
Taxonomy:
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
[] Authors:
Grabiele,M. and Aguilera,P.M.
Title:
SINE retroposons from the Amborella genome.
Journal:
Repbase Reports 23(4), 2663-2663 (2023)
Abstract:
De novo TE library from GCA_000471905.1. Consensus of 7 entire or nearly entire length and poly A tail seqs; mean 80.57% identity to consensus. Additional features: tRNA related region (1-71; 113-183; 227-297; 340-437); A box (14-25; 126-137; 240-251; 353-364); B box (57-67; 169-179; 283-293; 396-406); LINE-related region (72-112; 144-226; 298-339; 463-501); unknown origin (438-462); poly A tail (502-509). SINE2-9c_Atr is identical to SINE2-9a_Atr but with two extra forward regions related to SINE2-6_Atr; exists one copy with visible TSDs (scaffold 10; AGAGATATGGGCCCAAT/AGAGGTATGGGTTCAAC). 20 consensus seqs belonging to SINE2-1_Atr to SINE2-11_Atr share the L1 lineage origin (L1-5_Atr and related seqs of Repbase).
Derived:
[1] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:

© 2001-2024 - Genetic Information Research Institute