Repbase Reports |
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| 2023, Volume 23, Issue 4 |
| April 30, 2023 |
| Copyright © 2001-2024 - Genetic Information Research Institute, California |
| ISSN# 1534-830X |
| Page 2663 |
SINE2-9c_Atr |
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SINE2-9c_Atr, a novel SINE retroposon from the Amborella trichopoda genome. |
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Submitted: 08-Apr-2023 |
Accepted: 30-Apr-2023 |
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Key Words: SINE2/tRNA; SINE; Non-LTR Retrotransposon; Transposable Element; SINE2-9c_Atr |
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Source: Amborella trichopoda |
Organism: Amborella trichopoda |
Taxonomy: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella |
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Authors: Grabiele,M. and Aguilera,P.M. |
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Title: SINE retroposons from the Amborella genome. |
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Journal: Repbase Reports 23(4), 2663-2663 (2023) |
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Abstract: De novo TE library from GCA_000471905.1. Consensus of 7 entire or nearly entire length and poly A tail seqs; mean 80.57% identity to consensus. Additional features: tRNA related region (1-71; 113-183; 227-297; 340-437); A box (14-25; 126-137; 240-251; 353-364); B box (57-67; 169-179; 283-293; 396-406); LINE-related region (72-112; 144-226; 298-339; 463-501); unknown origin (438-462); poly A tail (502-509). SINE2-9c_Atr is identical to SINE2-9a_Atr but with two extra forward regions related to SINE2-6_Atr; exists one copy with visible TSDs (scaffold 10; AGAGATATGGGCCCAAT/AGAGGTATGGGTTCAAC). 20 consensus seqs belonging to SINE2-1_Atr to SINE2-11_Atr share the L1 lineage origin (L1-5_Atr and related seqs of Repbase).
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Derived: [1] (Consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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