Repbase Reports

2023, Volume 23, Issue 6
June 30, 2023
Copyright © 2001-2024 - Genetic Information Research Institute, California
ISSN# 1534-830X
Page 4309

SINE2-10_Pha

SINE2-10_Pha, a novel SINE retroposon from the Panicum hallii genome.

Submitted:
05-Jun-2023
Accepted:
30-Jun-2023
Key Words:
SINE2/tRNA; SINE; Non-LTR Retrotransposon; Transposable Element; SINE2-10_Pha
Source:
Panicum hallii
Organism:
Panicum hallii
Taxonomy:
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum; Panicum sect. Panicum
[] Authors:
Grabiele,M. and Aguilera,P.M.
Title:
SINE retroposons from plant genomes.
Journal:
Repbase Reports 23(6), 4309-4309 (2023)
Abstract:
Analyzed genome: Panicum hallii v3.1 (Phytozome). Consensus of 2 seqs; mean 92.35% identity to consensus. Additional features: tRNA-related region (1-81); A box (14-24); B box (57-67); tRNA-unrelated region (82-323); poly A tail (324-332). The 2 copies differentiate mainly by indels; GCCTCACCAAACTC and GCTCATAAAAGCTACT TSDs, respectively.
Derived:
Download Sequence - Format:
IG, EMBL, FASTA
References:

© 2001-2024 - Genetic Information Research Institute