Repbase Reports

2023, Volume 23, Issue 6
June 30, 2023
Copyright © 2001-2024 - Genetic Information Research Institute, California
ISSN# 1534-830X
Page 4245

SINE2-11b_Egr

SINE2-11b_Egr, a novel SINE retroposon from the Eucalyptus grandis genome.

Submitted:
05-Jun-2023
Accepted:
30-Jun-2023
Key Words:
SINE2/tRNA; SINE; Non-LTR Retrotransposon; Transposable Element; SINE2-11b_Egr
Source:
Eucalyptus grandis
Organism:
Eucalyptus grandis
Taxonomy:
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
[] Authors:
Grabiele,M. and Aguilera,P.M.
Title:
SINE retroposons from plant genomes.
Journal:
Repbase Reports 23(6), 4245-4245 (2023)
Abstract:
Analyzed genome: Eucalyptus grandis v2.0 (Phytozome). Consensus of 25 seqs; mean 84.80% identity to consensus. Additional features: tRNA-related region (1-85); A box (14-25); B box (61-71); tRNA-unrelated region (86-207); poly A tail (208-220). First 160 nt similar to SINE2-1_Egr. SINE2-11_Egr variants a and b share 89.90% similarity.
Derived:
Download Sequence - Format:
IG, EMBL, FASTA
References:

© 2001-2024 - Genetic Information Research Institute