Repbase Reports

2023, Volume 23, Issue 6
June 30, 2023
Copyright © 2001-2024 - Genetic Information Research Institute, California
ISSN# 1534-830X
Page 4123

SINE2-1_Egr

SINE2-1_Egr, a novel SINE retroposon from the Eucalyptus grandis genome.

Submitted:
05-Jun-2023
Accepted:
30-Jun-2023
Key Words:
SINE2/tRNA; SINE; Non-LTR Retrotransposon; Transposable Element; SINE2-1_Egr
Source:
Eucalyptus grandis
Organism:
Eucalyptus grandis
Taxonomy:
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
[] Authors:
Grabiele,M. and Aguilera,P.M.
Title:
SINE retroposons from plant genomes.
Journal:
Repbase Reports 23(6), 4123-4123 (2023)
Abstract:
Analyzed genome: Eucalyptus grandis v2.0 (Phytozome). Consensus of 10 seqs; mean 87.89% identity to consensus. Additional features: tRNA-related region (1-82); A box (14-25); B box (58-68); tRNA-unrelated region (83-251); poly A tail (252-267). First 154 nt similar to SINE2-11_Egr; similar tRNA-unrelated region to SINE2-7_Egr.
Derived:
Download Sequence - Format:
IG, EMBL, FASTA
References:

© 2001-2024 - Genetic Information Research Institute