Repbase Reports

2023, Volume 23, Issue 6
June 30, 2023
Copyright © 2001-2024 - Genetic Information Research Institute, California
ISSN# 1534-830X
Page 4231

SINE2-2a_Fxa

SINE2-2a_Fxa, a novel SINE retroposon from the Fragaria x ananassa genome.

Submitted:
05-Jun-2023
Accepted:
30-Jun-2023
Key Words:
SINE2/tRNA; SINE; Non-LTR Retrotransposon; Transposable Element; SINE2-2a_Fxa
Source:
Fragaria x ananassa
Organism:
Fragaria x ananassa
Taxonomy:
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
[] Authors:
Grabiele,M. and Aguilera,P.M.
Title:
SINE retroposons from plant genomes.
Journal:
Repbase Reports 23(6), 4231-4231 (2023)
Abstract:
Analyzed genome: Fragaria x ananassa v1.0.a1 (Phytozome). Consensus of 30 seqs; mean 90.74% identity to consensus. Additional features: tRNA-related region (1-113); A box (13-23); B box (89-99); tRNA-unrelated region (114-192); poly A tail (193-201). SINE2-2_Fxa variants a to c share 88.20% similarity. 98.30% similar to SINE2-2_Fv.
Derived:
Download Sequence - Format:
IG, EMBL, FASTA
References:

© 2001-2024 - Genetic Information Research Institute