Repbase Reports |
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| 2023, Volume 23, Issue 6 |
| June 30, 2023 |
| Copyright © 2001-2024 - Genetic Information Research Institute, California |
| ISSN# 1534-830X |
| Page 4273 |
SINE2-2a_Sre |
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SINE2-2a_Sre, a novel SINE retroposon from the Stevia rebaudiana genome. |
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Submitted: 05-Jun-2023 |
Accepted: 30-Jun-2023 |
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Key Words: SINE2/tRNA; SINE; Non-LTR Retrotransposon; Transposable Element; SINE2-2a_Sre |
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Source: Stevia rebaudiana |
Organism: Stevia rebaudiana |
Taxonomy: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Eupatorieae; Stevia |
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Authors: Grabiele,M. and Aguilera,P.M. |
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Title: SINE retroposons from plant genomes. |
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Journal: Repbase Reports 23(6), 4273-4273 (2023) |
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Abstract: Analyzed genome: assembly of Xu et al. (2021) (NCBI BioProject PRJNA684944). Consensus of 50 seqs; mean 91.33% identity to consensus. Additional features: tRNA related region (1-91); A box (14-24); B box (67-77); tRNA-unrelated region (92-142); repeat ATACTAAC (95-102; 109-116; 117-124; 125-131); poly A tail (143-152). Mainly differs from SINE2-2b_Sre by a copy of the repeat ATAACTAC at the tRNA-unrelated region. SINE2-2_Sre variants a to c share 81.40% similarity.
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Derived: |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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