Repbase Reports

2023, Volume 23, Issue 6
June 30, 2023
Copyright © 2001-2024 - Genetic Information Research Institute, California
ISSN# 1534-830X
Page 4205

SINE2-2b_Cqu

SINE2-2b_Cqu, a novel SINE retroposon from the Chenopodium quinoa genome.

Submitted:
05-Jun-2023
Accepted:
30-Jun-2023
Key Words:
SINE2/tRNA; SINE; Non-LTR Retrotransposon; Transposable Element; SINE2-2b_Cqu
Source:
Chenopodium quinoa
Organism:
Chenopodium quinoa
Taxonomy:
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
[] Authors:
Grabiele,M. and Aguilera,P.M.
Title:
SINE retroposons from plant genomes.
Journal:
Repbase Reports 23(6), 4205-4205 (2023)
Abstract:
Analyzed genome: Chenopodium quinoa v1.0 (Phytozome). Consensus of 50 seqs; mean 91.15% identity to consensus. Additional features: tRNA-related region (1-82); A Box (13-24); B Box (58-68); tRNA-unrelated region (83-183); poly A tail (184-191). SINE2-2_Cqu variants a and b share 66.50% similarity.
Derived:
Download Sequence - Format:
IG, EMBL, FASTA
References:

© 2001-2024 - Genetic Information Research Institute