Repbase Reports |
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| 2023, Volume 23, Issue 6 |
| June 30, 2023 |
| Copyright © 2001-2024 - Genetic Information Research Institute, California |
| ISSN# 1534-830X |
| Page 4098 |
SINE2-2b_Fxa |
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SINE2-2b_Fxa, a novel SINE retroposon from the Fragaria x ananassa genome. |
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Submitted: 05-Jun-2023 |
Accepted: 30-Jun-2023 |
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Key Words: SINE2/tRNA; SINE; Non-LTR Retrotransposon; Transposable Element; SINE2-2b_Fxa |
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Source: Fragaria x ananassa |
Organism: Fragaria x ananassa |
Taxonomy: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria |
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Authors: Grabiele,M. and Aguilera,P.M. |
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Title: SINE retroposons from plant genomes. |
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Journal: Repbase Reports 23(6), 4098-4098 (2023) |
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Abstract: Analyzed genome: Fragaria x ananassa v1.0.a1 (Phytozome). Consensus of 30 seqs; mean 94.66% identity to consensus. Additional features: tRNA-related region (1-114); A box (13-24); B box (90-100); tRNA-unrelated region (115-192); poly A tail (193-204). SINE2-2_Fxa variants a to c share 88.20% similarity. 87.40% similar to SINE2-2_Fv.
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Derived: |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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