Repbase Reports |
|---|
| 2023, Volume 23, Issue 6 |
| June 30, 2023 |
| Copyright © 2001-2024 - Genetic Information Research Institute, California |
| ISSN# 1534-830X |
| Page 4137 |
SINE2-2b_Sre |
|||
|---|---|---|---|
SINE2-2b_Sre, a novel SINE retroposon from the Stevia rebaudiana genome. |
|||
|
Submitted: 05-Jun-2023 |
Accepted: 30-Jun-2023 |
||
|
Key Words: SINE2/tRNA; SINE; Non-LTR Retrotransposon; Transposable Element; SINE2-2b_Sre |
|||
|
Source: Stevia rebaudiana |
Organism: Stevia rebaudiana |
Taxonomy: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Eupatorieae; Stevia |
|
| [] |
Authors: Grabiele,M. and Aguilera,P.M. |
||
|
Title: SINE retroposons from plant genomes. |
|||
|
Journal: Repbase Reports 23(6), 4137-4137 (2023) |
|||
Abstract: Analyzed genome: assembly of Xu et al. (2021) (NCBI BioProject PRJNA684944). Consensus of 36 seqs; mean 92.73% identity to consensus. Additional features: tRNA related region (1-91); A box (14-24); B box (67-77); tRNA-unrelated region (92-133); repeat ATACTAAC (94-101; 108-115; 116-122); poly A tail (134-142). Mainly differs from SINE2-2a_Sre by a copy of the repeat ATAACTAC at the tRNA-unrelated region. SINE2-2_Sre variants a to c share 81.40% similarity.
|
|||
|
Derived: |
|||
|
Download Sequence - Format: IG, EMBL, FASTA |
|||
|
References: |
|||