Repbase Reports |
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| 2023, Volume 23, Issue 6 |
| June 30, 2023 |
| Copyright © 2001-2024 - Genetic Information Research Institute, California |
| ISSN# 1534-830X |
| Page 4144 |
SINE2-4a_Pha |
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SINE2-4a_Pha, a novel SINE retroposon from the Panicum hallii genome. |
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Submitted: 05-Jun-2023 |
Accepted: 30-Jun-2023 |
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Key Words: SINE2/tRNA; SINE; Non-LTR Retrotransposon; Transposable Element; SINE2-4a_Pha |
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Source: Panicum hallii |
Organism: Panicum hallii |
Taxonomy: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum; Panicum sect. Panicum |
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Authors: Grabiele,M. and Aguilera,P.M. |
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Title: SINE retroposons from plant genomes. |
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Journal: Repbase Reports 23(6), 4144-4144 (2023) |
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Abstract: Analyzed genome: Panicum hallii v3.1 (Phytozome). Consensus of 22 seqs; mean 92.70% identity to consensus. Additional features: tRNA-related region (1-83); A box (14-25); B box (59-69); tRNA-unrelated region (84-289); poly T tail (173-178). 99.66% similar to SINE2-4_PaM. SINE2-4_Pha variants a to d share 79.40% similarity.
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Derived: |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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