Repbase Reports

2023, Volume 23, Issue 6
June 30, 2023
Copyright © 2001-2024 - Genetic Information Research Institute, California
ISSN# 1534-830X
Page 4289

SINE2-5_Sit

SINE2-5_Sit, a novel SINE retroposon from the Setaria italica genome.

Submitted:
05-Jun-2023
Accepted:
30-Jun-2023
Key Words:
SINE2/tRNA; SINE; Non-LTR Retrotransposon; Transposable Element; SINE2-5_Sit
Source:
Setaria italica
Organism:
Setaria italica
Taxonomy:
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
[] Authors:
Grabiele,M. and Aguilera,P.M.
Title:
SINE retroposons from plant genomes.
Journal:
Repbase Reports 23(6), 4289-4289 (2023)
Abstract:
Analyzed genome: Setaria italica v2.2 (Phytozome). Consensus of 33 seqs; mean 82.65% identity to consensus. Additional features: tRNA-related region (1-89); A box (14-24); B box (65-75); tRNA-unrelated region (90-293); poly A tail (294-301). Mostly 5p truncated copies.
Derived:
Download Sequence - Format:
IG, EMBL, FASTA
References:

© 2001-2024 - Genetic Information Research Institute