Repbase Reports |
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| 2023, Volume 23, Issue 6 |
| June 30, 2023 |
| Copyright © 2001-2024 - Genetic Information Research Institute, California |
| ISSN# 1534-830X |
| Page 4200 |
SINE2-5a_Cisi |
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SINE2-5a_Cisi, a novel SINE retroposon from the Citrus sinensis genome. |
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Submitted: 05-Jun-2023 |
Accepted: 30-Jun-2023 |
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Key Words: SINE2/tRNA; SINE; Non-LTR Retrotransposon; Transposable Element; SINE2-5a_Cisi |
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Source: Citrus sinensis |
Organism: Citrus sinensis |
Taxonomy: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus |
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Authors: Grabiele,M. and Aguilera,P.M. |
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Title: SINE retroposons from plant genomes. |
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Journal: Repbase Reports 23(6), 4200-4200 (2023) |
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Abstract: Analyzed genome: Citrus sinensis v1.1 (Phytozome). Consensus of 16 seqs; mean 88.58% identity to consensus. Additional features: tRNA-related region (1-93); A box (14-25); B box (69-79); tRNA-unrelated region (94-179); poly A tail (180-191). SINE2-5_Cisi variants a and b share 81.60% similarity.
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Derived: |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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