Repbase Reports

2023, Volume 23, Issue 6
June 30, 2023
Copyright © 2001-2024 - Genetic Information Research Institute, California
ISSN# 1534-830X
Page 4211

SINE2-5b_BDi

SINE2-5b_BDi, a novel SINE retroposon from the Brachypodium distachyon genome.

Submitted:
05-Jun-2023
Accepted:
30-Jun-2023
Key Words:
SINE2/tRNA; SINE; Non-LTR Retrotransposon; Transposable Element; SINE2-5b_BDi
Source:
Brachypodium distachyon
Organism:
Brachypodium distachyon
Taxonomy:
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Pooideae; Stipodae; Brachypodieae; Brachypodium
[] Authors:
Grabiele,M. and Aguilera,P.M.
Title:
SINE retroposons from plant genomes.
Journal:
Repbase Reports 23(6), 4211-4211 (2023)
Abstract:
Analyzed genome: Brachypodium distachyon v3.1 (Phytozome). Consensus of 50 seqs; mean 91.04% identity to consensus. Additional features: tRNA-related region (1-86); A Box (14-24); B Box (62-72); tRNA-unrelated region (87-282); poly T tail (283-289). SINE2-5_BDi variants a and b share 74.10% similarity.
Derived:
Download Sequence - Format:
IG, EMBL, FASTA
References:

© 2001-2024 - Genetic Information Research Institute